View Alignment
Full query sequence not found in the database. To view the full query sequence here, upload the query sequence FASTA file.

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: AFFX-BioB-3_at (Length: 298)

Name: AFFX-BioB-3_at
Description: affx|AFFX-BioB-3
Algorithm: BLASTX 7.5.1
Database: go-200510-seqdb; (91655 entries, 44081103 letters)


[»] AFFX-BioB-3_at
AFFX-BioB-3_at
[»] TIGR_CMR|SO2740 (1 HSPs)
TIGR_CMR|SO2740 (2-295)||(252-350)


Alignment Details
Target: TIGR_CMR|SO2740 (Bit Score: 117; Significance: 5e-26; HSPs: 1)
Name: TIGR_CMR|SO2740
Description: SPTR:Q8EDK6 symbol:SO2740 "biotin synthase" [GO:0004076 "biotin synthase activity" evidence=ISS] [GO:0009102 "biotin biosynthesis" evidence=ISS] Pfam:PF04055 InterPro:IPR007197 InterPro:IPR006638 SMART:SM00729 InterPro:IPR010722 InterPro:IPR002684 Pfam:PF06968 PIRSF:PIRSF001619 TIGRFAMs:TIGR00433 EMBL:AE015713 HSSP:P12996 TIGR:SO2740 SPTR:Q8EDK6

Target: TIGR_CMR|SO2740; HSP #1
Raw Score: 291; E-Value: 5e-26
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 252 - 350
Alignment:
2 VARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTD-EYYNAAAL 295  Q
    ||||.|| | |||||||| |... ||||| ||||||||||||||||||||  |. |||.||| |.| |  . |.||    . |        ..|.||||    
252 VARILMPLSRVRLSAGRENMSDELQAMCFFAGANSIFYGCKLLTTPNPEESDDMGLFRRLGLRPEQGAAASIDDEQAVLAKAAAYQDKASAQFYDAAAL 350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ] [ Previous Page ]



[ Go Back ]


 

 

 

Copyright © 2005 - 2007 Samuel Roberts Noble Foundation