Table: The latest results of our predictions on model genomes under threshold 0.0001.
|
genome |
protein number |
predicted transporters |
percent of transporters (%) |
average TMS in predictions |
average TMS in rejections |
zero TMS in predictions (%) |
zero TMS in organism (%) |
|
Escherichia Coli |
5423 |
883 |
16.28 |
5.05 |
0.94 |
15.52 |
43.68 |
|
Saccharomyces Cerevisiae |
5877 |
58 |
9.90 |
5.62 |
0.94 |
20.45 |
50.76 |
|
Drosophila Melanogaster |
14006 |
977 |
8.03 |
6.03 |
1.19 |
13.84 |
37.58 |
|
Caenorhabditis Elegans |
20051 |
1214 |
6.51 |
5.81 |
1.58 |
11.42 |
36.73 |
|
Arabidopsis Thaliana |
26751 |
1643 |
6.13 |
6.36 |
1.09 |
13.72 |
39.83 |
|
Oryza Sativa |
55890 |
1668 |
3.37 |
6.13 |
1.08 |
13.55 |
38.82 |
|
Homo Sapiens |
34180 |
2006 |
5.87 |
5.07 |
1.08 |
17.15 |
43.89 |
Table: The latest validation results with TransportDB and annotation information for predictions on model genomes and threshold 0.0001.
|
genome |
predicted transporters |
transportDB predictions |
exact matches |
partial matches |
TransportDB unique |
Our validated unique |
overlap rate (%) |
total validated rate (%) |
|
Escherichia Coli |
883 |
579 |
484 |
18 |
77 |
103 |
86.70 |
68.52 |
|
Saccharomyces Cerevisiae |
582 |
341 |
306 |
5 |
30 |
141 |
91.20 |
77.66 |
|
Drosophila Melanogaster |
977 |
647 |
541 |
7 |
89 |
60 |
84.70 |
62.23 |
|
Caenorhabditis Elegans |
1214 |
669 |
561 |
12 |
97 |
115 |
85.50 |
56.67 |
|
Arabidopsis Thaliana |
1643 |
976 |
845 |
15 |
116 |
307 |
88.11 |
71.03 |
|
Oryza Sativa |
1668 |
1285 |
968 |
36 |
281 |
133 |
78.13 |
68.17 |
|
Homo Sapiens |
2006 |
948 |
797 |
14 |
137 |
403 |
85.55 |
60.52 |