genome_name

Predictive Results using BLAST & HMM with e-value 0.0001.

Genome_name	Genome size	Predicted num	Predicted rate(%)	Tms positive	Tms negative	Zero TMS rate positive(%)	Zero TMS rate background(%)	TMS ratio
E. coli	5324	916	17.21	4.93	0.94	17.03	43.63	5.24
S. cerevisiae	6310	609	9.65	5.43	1.03	21.02	47.00	5.27
D. melanogaster	13779	1095	9.20	5.46	1.19	15.83	37.24	4.59
C. elegans	20051	1357	7.33	5.37	1.58	14.04	36.73	4.40
A. thaliana	26536	1757	6.69	5.98	1.08	14.75	39.93	5.54
O. sativa	62827	1957	3.99	5.68	1.07	13.44	38.82	5.31
H. sapiens	27960	2236	8.00	4.5	1.16	18.52	39.99	3.88
P. torridus	1535	199	12.96	6.99	1.25	14.57	45.41	5.59
P. profundum	5491	871	15.86	4.78	1.04	16.53	42.21	4.60
D. psychrophila	3234	493	15.24	4.64	1.24	17.04	36.8	3.74
A. fumigatus	9923	980	9.88	7.01	1.21	12.76	36.21	5.79

Validation Results using BLAST & HMM with e-value 0.0001.

Genome name	Predicted num	TransportDB predict num	Exact matches with TransDB	Partial matches with TransportDB	Unmatched with TransDB	Other validated	Matched rate(%)	Total validated rate(%)
E.coli	916	579	507	17	55	102	90.50	68.34
S.cerevisiae	609	341	311	5	25	19	92.67	55.01
D.melanogaster	1095	647	561	7	79	61	87.79	57.44
C.elegans	1357	669	580	13	77	119	88.49	52.47
A.thaliana	1757	976	866	15	95	162	90.27	59.36
O.sativa	1957	1285	1057	40	188	149	85.37	63.67
H.sapiens	2236	948	859	23	66	391	93.04	56.93
P. torridus	199	171	127	5	39	27	77.19	79.90
P. profundum	871	582	481	8	93	73	84.02	64.52
D. psychrophila	493	305	237	7	61	49	80.00	59.43
A. fumigatus	980	620	567	7	46	74	92.58	66.12

Validation results using BLAST with e-value 0.0001.

Genome name	Predicted num	TransportDB predict num	Exact matches with Transport DB	Partial matches with TransportDB	Unmatched with TransportDB	Other validated	Matched rate(%)	Total validated rate(%)
E.coli	933	579	501	16	62	105	89.29	66.67
S.cerevisiae	681	341	305	6	30	23	91.2	49.05
D.melanogaster	1289	647	547	9	91	64	85.94	48.10
C.elegans	1534	669	557	12	100	119	85.05	44.85
A.thaliana	2177	976	874	13	89	175	90.88	48.78
O.sativa	2575	1285	1080	34	171	177	86.69	50.14
H.sapiens	2769	948	864	23	61	438	93.57	47.85
P. torridus	182	171	104	4	63	26	63.16	73.63
P. profundum	925	582	481	8	93	76	84.02	61.08
D. psychrophila	538	305	244	5	56	54	81.64	56.32
A. fumigatus	1080	620	566	7	47	78	92.42	60.28