|
class_id |
family
name |
training
size |
testing
size |
SPST
recall/precision |
SVM
recall |
our
average precision |
our
average recall |
|
1.A.4 |
Transient
receptor potential Ca2+ channel TRP-CC |
24 |
6 |
83.33% |
|
100.00% |
91.40% |
|
1.A.8 |
Major
intrinsic protein MIP |
21 |
5 |
20.00% |
|
100.00% |
100.00% |
|
1.B.1 |
General
bacterial porin GBP |
15 |
4 |
50.00% |
|
100.00% |
95.00% |
|
1.B.12 |
Autotransporter
AT |
13 |
3 |
33.33% |
|
100.00% |
86.80% |
|
1.B.14 |
Outer-membrane
receptor OMR |
24 |
6 |
33.33% |
|
100.00% |
86.60% |
|
1.C.36 |
Bacterial
type III-target cell pore IIITCP |
12 |
3 |
0.00% |
|
80.00% |
46.80% |
|
2.A.1 |
Major
facilitator superfamily MFS |
178 |
45 |
20.00% |
76.50% |
78.37% |
79.96% |
|
2.A.3 |
Amino
acid/polyamine-organic cation superfamily APC |
50 |
13 |
46.15% |
93.90% |
81.38% |
82.51% |
|
2.A.6 |
Resistance-nodulation-cell
division factor superfamily RND |
46 |
12 |
50.00% |
71.90% |
52.04% |
48.29% |
|
2.A.7 |
Drug/metabolite
transporter superfamily DMT |
36 |
9 |
0.00% |
|
83.93% |
83.93% |
|
2.A.18 |
Amino acid/auxin
transporter (aka permease) AAAP |
15 |
6 |
33.33% |
|
100.00% |
96.00% |
|
2.A.21 |
Solute,Na+
symporter SSS |
14 |
4 |
25.00% |
|
100.00% |
85.00% |
|
2.A.22 |
Neurotransmitter,Na+
symporter NSS |
16 |
4 |
100.00% |
|
100.00% |
96.60% |
|
2.A.29 |
Mitochondrial
carrier MC |
38 |
9 |
66.67% |
|
100.00% |
93.80% |
|
2.A.38 |
K+
transporter Trk |
14 |
4 |
100.00% |
|
100.00% |
73.40% |
|
2.A.47 |
Divalent
anion,Na+ symporter DASS |
13 |
3 |
33.33% |
|
100.00% |
95.00% |
|
2.A.49 |
Ammonium transporter
Amt |
14 |
3 |
66.67% |
|
100.00% |
100.00% |
|
2.A.53 |
Sulfate
porter (aka permease) SulP |
16 |
4 |
0.00% |
|
100.00% |
100.00% |
|
2.A.63 |
Univalent
cation (K+ or Na+):H+ antiporter-3 CPA3 |
13 |
3 |
33.33% |
|
80.00% |
38.20% |
|
2.A.66 |
Multi-antimicrobial
extrusion factor MATE |
19 |
5 |
20.00% |
|
100.00% |
70.40% |
|
3.A.1 |
ATP-binding-cassette
superfamily ABC ABC-type importers (all from Bacteria and Archaea) |
480 |
120 |
|
94.10% |
47.66% |
50.29% |
|
3.A.2 |
H+- or Na+-translocating
F-type, V-type and A-type ATPase superfamily F-ATPase |
49 |
12 |
25.00% |
|
52.80% |
23.73% |
|
3.A.3 |
P-type
ATPase superfamily P-ATPase |
40 |
10 |
70.00% |
97.10% |
80.66% |
81.88% |
|
3.A.5 |
Type II (general)
secretory pathway IISP |
35 |
9 |
11.11% |
85.90% |
88.40% |
41.00% |
|
3.A.6 |
Type III
(virulence-related) secretory pathway IIISP |
18 |
4 |
0.00% |
|
40.00% |
16.60% |
|
3.A.7 |
Type IV
(conjugal DNA-protein transfer) secretory pathway IVSP |
86 |
21 |
4.76% |
|
98.40% |
28.60% |
|
3.A.8 |
Mitochondrial
protein translocating system (Tim-Tom) MPT |
16 |
4 |
0.00% |
|
20.00% |
4.00% |
|
3.A.9 |
Chloroplast
protein translocating system (Tic-Toc) CEPT |
8 |
2 |
0.00% |
|
40.00% |
20.00% |
|
3.A.15 |
The Outer
Membrane Protein Secreting Main Terminal Branch (MTB) Family |
19 |
5 |
0.00% |
60.60% |
92.00% |
29.00% |
|
3.B.1 |
Na+-transporting
carboxylic acid decarboxylase NaT-DC |
18 |
4 |
50.00% |
|
100.00% |
59.00% |
|
3.D.1 |
Proton-translocating
NADH dehydrogenase NDH |
45 |
11 |
18.18% |
|
83.80% |
67.00% |
|
3.D.4 |
Proton-translocating
cytochrome oxidase superfamily COX |
27 |
7 |
28.57% |
|
6.67% |
3.62% |
|
3.D.8 |
Na+- or H+-pumping
formylmethanofuran dehydrogenase FMF-DH |
14 |
3 |
100.00% |
|
100.00% |
81.80% |
|
4.A.1 |
PTS
Glucose-glucoside Glc |
18 |
5 |
60.00% |
|
100.00% |
92.60% |
|
4.A.6 |
PTS
Mannose/fructose/sorbose Man |
14 |
4 |
75.00% |
|
100.00% |
80.00% |
|
5.A.3 |
The
Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family |
41 |
10 |
60.00% |
|
100.00% |
78.20% |