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      Medicago truncatula Gene Expression Atlas  
 
 
Current Version: V2 (July 2009)
# of Experiments: 64
# of GeneChips: 156
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Sample Selection    MTV
Batch Download by Experiment

This page lists the expression data by experiment (referred to as "chip", "slide" elsewhere) and allows you to download all expressions for experiments of your selection. Experiments are grouped by their data sources (authors).

NOTE: The download file will be generated from the database on the fly. Please be patient while you are expecting a large data set.

Benedito et al. (2008)
Leaf: Organ: leaf. Treatment Type: standard. Treatment: reference (28d-old organ)
Selection: leaf1leaf2leaf3 Mean (leaf)

Petiole: Organ: petiole. Treatment Type: standard. Treatment: reference (28d-old organ)
Selection: petiole1petiole2petiole3 Mean (petiole)

Stem: Organ: stem. Treatment Type: standard. Treatment: reference (28d-old organ)
Selection: stem_1stem_2stem_3 Mean (stem)

Vegetative Bud: Organ: vegetative bud. Treatment Type: standard. Treatment: reference (28d-old organ)
Selection: vegbud_1vegbud_2vegbud_3 Mean (vegbud)

Flower: Organ: flower. Treatment Type: standard. Treatment: reference (28d-old organ)
Selection: flower1flower2flower3 Mean (flower)

Seed: 10dap-late embryogenesis (heart stage): Organ: seed. Treatment Type: standard. Treatment: 10dap developing seeds: late embryogenesis (heart stage) (time course)
Selection: seed_10dap_1seed_10dap_2seed_10dap_3 Mean (seed_10dap)

Seed: 12dap-transition phase: Organ: seed. Treatment Type: standard. Treatment: 12dap developing seeds: transition phase (time course)
Selection: seed_12dap_1seed_12dap_2seed_12dap_3 Mean (seed_12dap)

Seed: 16dap-seed filling: Organ: seed. Treatment Type: standard. Treatment: 16dap developing seeds: seed filling (time course)
Selection: seed_16dap_1seed_16dap_2seed_16dap_3 Mean (seed_16dap)

Seed: 20dap-seed filling: Organ: seed. Treatment Type: standard. Treatment: 20dap developing seeds: seed filling (time course)
Selection: seed_20dap_1seed_20dap_2seed_20dap_3 Mean (seed_20dap)

Seed: 24dap seed filling: Organ: seed. Treatment Type: standard. Treatment: 24dap developing seeds: seed filling (time course)
Selection: seed_24dap_1seed_24dap_2seed_24dap_3 Mean (seed_24dap)

Seed: 36dap-physiological maturity: Organ: seed. Treatment Type: standard. Treatment: 36dap developing seeds: physiological maturity (time course)
Selection: seed_36dap_1seed_36dap_2seed_36dap_3 Mean (seed_36dap)

Pod: Organ: pod. Treatment Type: standard. Treatment: reference (28d-old organ)
Selection: pod1pod2pod3 Mean (pod)

Root: Organ: root. Treatment Type: standard. Treatment: reference (28d-old organ)
Selection: root1root2root3 Mean (root)

Root-0dpi (nodule control): Organ: root. Treatment Type: biological. Treatment: root at inoculation inoculation (control)
Selection: rt_0dpi_1rt_0dpi_2rt_0dpi_3 Mean (rt_0dpi)

Nodule-4dpi (bumps): Organ: nodule. Treatment Type: biological. Treatment: 4d after rhizobial inoculation (lumps)
Selection: nod_4dpi_1nod_4dpi_2nod_4dpi_3 Mean (nod_4dpi)

Nodule-10dpi (immature nodules): Organ: nodule. Treatment Type: biological. Treatment: 10d after rhizobial inoculation (immature nodules)
Selection: nod_10dpi_1nod_10dpi_2nod_10dpi_3 Mean (nod_10dpi)

Nodule-14dpi (fixing nitrogen): Organ: nodule. Treatment Type: biological. Treatment: 14d after rhizobial inoculation (N2 fixing)
Selection: nod_14dpi_1nod_14dpi_2nod_14dpi_3 Mean (nod_14dpi)

Nodule-16dpi (2d after NO3 treatment): Organ: nodule. Treatment Type: biological. Treatment: 16d after rhizobial inoculation (2d after NO3 treatment)
Selection: nod_16dpi_no3_1nod_16dpi_no3_2nod_16dpi_no3_3 Mean (nod_16dpi_no3)

Nodule-28dpi: Organ: nodule. Treatment Type: biological. Treatment: 28d after rhizobial inoculation (reference organ)
Selection: nod_28dpi_1nod_28dpi_2nod_28dpi_3 Mean (nod_28dpi)

Root-denodulated: Organ: root. Treatment Type: biological. Treatment: 28d-old denodulated roots
Selection: rt_denod_28dpi_1rt_denod_28dpi_2rt_denod_28dpi_3 Mean (rt_denod_28dpi)

Daofeng Li (unpublished)
Root-0h (200mM NaCl) - control: Organ: root. Treatment Type: chemical / physical. Treatment: 2wk-old plants (hydroponics) - 0h under salt stress (200mM NaCl) - control
Selection: rt_2wks_sdl_hydroponic_200mm_nacl_0hrs Mean (rt_2wks_sdl_hydroponic_200mm_nacl_0hrs_1rep)

Root-1h (200mM NaCl): Organ: root. Treatment Type: chemical / physical. Treatment: 2wk-old plants (hydroponics) -1h under salt stress (200mM NaCl)
Selection: rt_2wks_sdl_hydroponic_200mm_nacl_1hrs Mean (rt_2wks_sdl_hydroponic_200mm_nacl_1hrs_1rep)

Root-2h (200mM NaCl): Organ: root. Treatment Type: chemical / physical. Treatment: 2wk-old plants (hydroponics) -2h under salt stress (200mM NaCl)
Selection: rt_2wks_sdl_hydroponic_200mm_nacl_2hrs Mean (rt_2wks_sdl_hydroponic_200mm_nacl_2hrs_1rep)

Root-5h (200mM NaCl): Organ: root. Treatment Type: chemical / physical. Treatment: 2wk-old plants (hydroponics) -5h under salt stress (200mM NaCl)
Selection: rt_2wks_sdl_hydroponic_200mm_nacl_5hrs Mean (rt_2wks_sdl_hydroponic_200mm_nacl_5hrs_1rep)

Root-10h (200mM NaCl): Organ: root. Treatment Type: chemical / physical. Treatment: 2wk-old plants (hydroponics) -10h under salt stress (200mM NaCl)
Selection: rt_2wks_sdl_hydroponic_200mm_nacl_10hrs Mean (rt_2wks_sdl_hydroponic_200mm_nacl_10hrs_1rep)

Root-24h (200mM NaCl): Organ: root. Treatment Type: chemical / physical. Treatment: 2wk-old plants (hydroponics) -24h under salt stress (200mM NaCl)
Selection: rt_2wks_sdl_hydroponic_200mm_nacl_24hrs Mean (rt_2wks_sdl_hydroponic_200mm_nacl_24hrs_1rep)

Gomez et al. (2009)
Root-non-mycorrhizal: Organ: root. Treatment Type: biological. Treatment: 6wk-old uninoculated roots (control for mycorrhization)
Selection: rt_myc_ck1rt_myc_ck2rt_myc_ck3 Mean (rt_myc_ck)

Root-mycorrhizal: Organ: root. Treatment Type: biological. Treatment: 6wk-old (30dpi) mycorrhizal roots
Selection: rt_myc_inf1rt_myc_inf2rt_myc_inf3 Mean (rt_myc_inf)

Holmes et al. (2008)
Root (1cm adjacent from tip): Organ: root. Treatment Type: spatial. Treatment: 3d-old root (1 cm adjacent from root tip)
Selection: rt_1cm_adj_tip_1rt_1cm_adj_tip_2rt_1cm_adj_tip_3 Mean (rt_1cm_adj_tip)

Root (3mm tip): Organ: root. Treatment Type: spatial. Treatment: 3d-old root tip (3 mm meristem)
Selection: rt_3mm_tip_1rt_3mm_tip_2rt_3mm_tip_3 Mean (rt_3mm_tip)

Imin et al. (2008)
Leaf-2HA-1wk B5: Organ: leaf. Treatment Type: standard. Treatment: 2HA leaf
Selection: lf_2ha_1wk_1lf_2ha_1wk_2lf_2ha_1wk_3 Mean (lf_2ha_1wk)

Leaf-2HA-1wk B5+NAA: Organ: leaf. Treatment Type: chemical. Treatment: 2HA leaf explants P4 + NAA (1 week)
Selection: lf_2ha_1wk_naa2lf_2ha_1wk_naa_1lf_2ha_1wk_naa_3 Mean (lf_2ha_1wk_naa)

Leaf-2HA-2wk B5+NAA+BAP: Organ: leaf. Treatment Type: chemical. Treatment: 2HA leaf explants P4 + NAA + BAP (2 weeks)
Selection: lf_2ha_2wks_naa_bap_1lf_2ha_2wks_naa_bap_2lf_2ha_2wks_naa_bap_3 Mean (lf_2ha_2wks_naa_bap)

Leaf-Jemalong-2wk B5+NAA+BAP: Organ: leaf. Treatment Type: chemical. Treatment: Jemalong leaf explants P4 + NAA + BAP (2 weeks)
Selection: lf_jemalong_2wks_naa_bap_1lf_jemalong_2wks_naa_bap_2lf_jemalong_2wks_naa_bap_3 Mean (lf_jemalong_2wks_naa_bap)

Naoumkina et al. (2007)
Cell Suspension- MeJA control (2h): Organ: cell suspension. Treatment Type: chemical. Treatment: 2h (control)
Selection: cs_mj_2hr_ck1cs_mj_2hr_ck2 Mean (cs_mj_2hr_ck)

Cell Suspension-MeJA (2h): Organ: cell suspension. Treatment Type: chemical. Treatment: 2h under Methyl Jasmonate
Selection: cs_mj_2hr_1cs_mj_2hr_2 Mean (cs_mj_2hr)

Cell Suspension- MeJA control (24h): Organ: cell suspension. Treatment Type: chemical. Treatment: 24h (control)
Selection: cs_mj_24hr_ck1cs_mj_24hr_ck2 Mean (cs_mj_24hr_ck)

Cell Suspension-MeJA (24h): Organ: cell suspension. Treatment Type: chemical. Treatment: 24h under Methyl Jasmonate
Selection: cs_mj_24hr_1cs_mj_24hr_2 Mean (cs_mj_24hr)

Cell Suspension- YE control (0h): Organ: cell suspension. Treatment Type: biological. Treatment: 0h under Yeast Elicitor (control)
Selection: cs_ye_0hr_ck1cs_ye_0hr_ck2 Mean (cs_ye_0hr_ck)

Cell Suspension- YE control (2h): Organ: cell suspension. Treatment Type: biological. Treatment: 2h (control)
Selection: cs_ye_2hr_ck1cs_ye_2hr_ck2 Mean (cs_ye_2hr_ck)

Cell Suspension- YE (2h): Organ: cell suspension. Treatment Type: biological. Treatment: 2h under Yeast Elicitor
Selection: cs_ye_2hr_1cs_ye_2hr_2 Mean (cs_ye_2hr)

Cell Suspension- YE control (24h): Organ: cell suspension. Treatment Type: biological. Treatment: 24h (control)
Selection: cs_ye_24hr_ck1cs_ye_24hr_ck3 Mean (cs_ye_24hr_ck)

Cell Suspension- YE (24h): Organ: cell suspension. Treatment Type: biological. Treatment: 24h under Yeast Elicitor
Selection: cs_ye_24hr_1cs_ye_24hr_2 Mean (cs_ye_24hr)

Naoumkina et al. (2008)
Transg. Seed: 20-22dap (empty vector control): Organ: seed. Treatment Type: transgenics. Treatment: 20-22dap seeds (empty pCambia 2301 vector control) - from T0 plants
Selection: seeds_transgenic_r108_emptyvec_1seeds_transgenic_r108_emptyvec_2seeds_transgenic_r108_emptyvec_3 Mean (seeds_transgenic_r108_emptyvec)

Transg. Seed: 20-22dap (mannan synthase): Organ: seed. Treatment Type: transgenics. Treatment: 20-22dap seeds expressing the guar Mannan Syntase (from T0 plants)
Selection: seeds_transgenic_r108_guarmannsynt_1seeds_transgenic_r108_guarmannsynt_2seeds_transgenic_r108_guarmannsynt_3 Mean (seeds_transgenic_r108_guarmannsynt)

Pang et al. (2008)
Seed coat (16-24dap): Organ: seed. Treatment Type: standard. Treatment: 16-24dap seed coat
Selection: seed_coat_1seed_coat_2seed_coat_3 Mean (seed_coat)

Hairy Root-GUS (TT2 control): Organ: root. Treatment Type: transgenics. Treatment: vector-control hairy roots (pCAMBIA2300)
Selection: rt_transgenic_gus_tt2_ck1rt_transgenic_gus_tt2_ck2 Mean (rt_transgenic_gus_tt2_ck)

Hairy Root-TT2: Organ: root. Treatment Type: transgenics. Treatment: AtTT2-expressing hairy roots (pCAMBIA2300)
Selection: rt_transgenic_tt2_1rt_transgenic_tt2_2 Mean (rt_transgenic_tt2)

Ruffel et al. (2008)
Shoot (split-root exp)-sufficient N2: Organ: whole shoot. Treatment Type: chemical. Treatment: 5wk-old shoot (split roots: sufficient N2)
Selection: sht_5wks_suffn2_n2pat1sht_5wks_suffn2_n2pat2 Mean (sht_5wks_suffn2_n2pat)

Shoot (split-root exp)-limited N2: Organ: whole shoot. Treatment Type: chemical. Treatment: 5wk-old shoot (split roots: limited N2)
Selection: sht_5wks_limtn2_n2pae1sht_5wks_limtn2_n2pae2 Mean (sht_5wks_limtn2_n2pae)

Shoot (split-root exp)-sufficient NH4: Organ: whole shoot. Treatment Type: chemical. Treatment: 5wk-old shoot (split roots: sufficient NH4)
Selection: sht_5wks_suffnh4_nh4pat1sht_5wks_suffnh4_nh4pat2 Mean (sht_5wks_suffnh4_nh4pat)

Shoot (split-root exp)-limited NH4: Organ: whole shoot. Treatment Type: chemical. Treatment: 5wk-old shoot (split roots: limited NH4)
Selection: sht_5wks_limtnh4_nh4pae1sht_5wks_limtnh4_nh4pae2 Mean (sht_5wks_limtnh4_nh4pae)

Shoot (split-root exp)-sufficient NO3: Organ: whole shoot. Treatment Type: chemical. Treatment: 5wk-old shoot (split roots: sufficient NO3)
Selection: sht_5wks_suffno3_no3pat1sht_5wks_suffno3_no3pat2 Mean (sht_5wks_suffno3_no3pat)

Shoot (split-root exp)-limited NO3: Organ: whole shoot. Treatment Type: chemical. Treatment: 5wk-old shoot (split roots: limited NO3)
Selection: sht_5wks_limtno3_no3pae1sht_5wks_limtno3_no3pae2 Mean (sht_5wks_limtno3_no3pae)

Split root: sufficient NH4: Organ: root. Treatment Type: chemical. Treatment: 5wk-old root (split roots: sufficient NH4)
Selection: rt_5wks_suffnh4_nh4s1rt_5wks_suffnh4_nh4s2 Mean (rt_5wks_suffnh4_nh4s)

Split root: limited NH4: Organ: root. Treatment Type: chemical. Treatment: 5wk-old root (split roots: limited NH4)
Selection: rt_5wks_limtnh4_nh4c1rt_5wks_limtnh4_nh4c2 Mean (rt_5wks_limtnh4_nh4c)

Split root: sufficient NO3: Organ: root. Treatment Type: chemical. Treatment: 5wk-old root (split roots: sufficient NO3)
Selection: rt_5wks_suffno3_no3s1rt_5wks_suffno3_no3s2 Mean (rt_5wks_suffno3_no3s)

Split root: limited NO3: Organ: root. Treatment Type: chemical. Treatment: 5wk-old root (split roots: limited NO3)
Selection: rt_5wks_limtno3_no3c1rt_5wks_limtno3_no3c2 Mean (rt_5wks_limtno3_no3c)

Split root: no NO3: Organ: root. Treatment Type: chemical. Treatment: 5wk-old root (split roots: no NO3)
Selection: rt_5wks_nono3_no3one1rt_5wks_nono3_no3one2 Mean (rt_5wks_nono3_no3one)

Split root (nodulating): sufficient N2: Organ: root. Treatment Type: chemical. Treatment: 5wk-old nodulated root (split roots: sufficient N2)
Selection: rt_nod_5wks_suffn2_n2s1rt_nod_5wks_suffn2_n2s2 Mean (rt_nod_5wks_suffn2_n2s)

Split root (nodulating): limited N2: Organ: root. Treatment Type: chemical. Treatment: 5wk-old nodulated root (split roots: limited N2)
Selection: rt_nod_5wks_limtn2_n2c1rt_nod_5wks_limtn2_n2c2 Mean (rt_nod_5wks_limtn2_n2c)

Uppalapati et al. (2009)
Root-0h Phymatotrichum: Organ: root. Treatment Type: biological. Treatment: 0h Phymatotrichum root rot infection (time-course)
Selection: rt_crr_0hpi_1rt_crr_0hpi_2rt_crr_0hpi_3 Mean (rt_crr_0hpi)

Root-72h Phymatotrichum: Organ: root. Treatment Type: biological. Treatment: 72h Phymatotrichum root rot infection (time-course)
Selection: rt_crr_72hpi_1rt_crr_72hpi_2rt_crr_72hpi_3 Mean (rt_crr_72hpi)

Root-96h Phymatotrichum: Organ: root. Treatment Type: biological. Treatment: 96h Phymatotrichum root rot infection (time-course)
Selection: rt_crr_96hpi_1rt_crr_96hpi_2rt_crr_96hpi_3 Mean (rt_crr_96hpi)

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