The Samuel Roberts Noble Foundation, Inc.   Noble Foundation | Plant Biology | Mt Gene Expression Atlas  
      Medicago truncatula Gene Expression Atlas  
 
 
Current Version: V2 (July 2009)
# of Experiments: 64
# of GeneChips: 156
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Sample Selection    MTV
Differential Expression Analysis

Currently, fold change analaysis is available for differential expressions analysis. More analysis modules will be available soon.

Reference experiment / slide:
Dominator of the fold calculation, B
  1: Cell Suspension-MeJA (24h)   2: Cell Suspension- MeJA control (24h)
  3: Cell Suspension-MeJA (2h)   4: Cell Suspension- MeJA control (2h)
  5: Cell Suspension- YE control (0h)   6: Cell Suspension- YE (24h)
  7: Cell Suspension- YE control (24h)   8: Cell Suspension- YE (2h)
  9: Cell Suspension- YE control (2h)   10: Flower
  11: Leaf   12: Leaf-2HA-1wk B5
  13: Leaf-2HA-1wk B5+NAA   14: Leaf-2HA-2wk B5+NAA+BAP
  15: Leaf-Jemalong-2wk B5+NAA+BAP   16: Nodule-10dpi (immature nodules)
  17: Nodule-14dpi (fixing nitrogen)   18: Nodule-16dpi (2d after NO3 treatment)
  19: Nodule-28dpi   20: Nodule-4dpi (bumps)
  21: Petiole   22: Pod
  23: Root   24: Root-0dpi (nodule control)
  25: Root (1cm adjacent from tip)   26: Root-0h (200mM NaCl) - control
  27: Root-10h (200mM NaCl)   28: Root-1h (200mM NaCl)
  29: Root-24h (200mM NaCl)   30: Root-2h (200mM NaCl)
  31: Root-5h (200mM NaCl)   32: Root (3mm tip)
  33: Split root: limited NH4   34: Split root: limited NO3
  35: Split root: no NO3   36: Split root: sufficient NH4
  37: Split root: sufficient NO3   38: Root-0h Phymatotrichum
  39: Root-72h Phymatotrichum   40: Root-96h Phymatotrichum
  41: Root-denodulated   42: Root-non-mycorrhizal
  43: Root-mycorrhizal   44: Split root (nodulating): limited N2
  45: Split root (nodulating): sufficient N2   46: Hairy Root-GUS (TT2 control)
  47: Hairy Root-TT2   48: Seed: 10dap-late embryogenesis (heart stage)
  49: Seed: 12dap-transition phase   50: Seed: 16dap-seed filling
  51: Seed: 20dap-seed filling   52: Seed: 24dap seed filling
  53: Seed: 36dap-physiological maturity   54: Seed coat (16-24dap)
  55: Transg. Seed: 20-22dap (empty vector control)   56: Transg. Seed: 20-22dap (mannan synthase)
  57: Shoot (split-root exp)-limited N2   58: Shoot (split-root exp)-limited NH4
  59: Shoot (split-root exp)-limited NO3   60: Shoot (split-root exp)-sufficient N2
  61: Shoot (split-root exp)-sufficient NH4   62: Shoot (split-root exp)-sufficient NO3
  63: Stem   64: Vegetative Bud
Target experiments / slides:
Numerators of the fold calculation, A.

Fold change is calculated as A/B
Select all Clear selections
  1: Cell Suspension-MeJA (24h)   2: Cell Suspension- MeJA control (24h)
  3: Cell Suspension-MeJA (2h)   4: Cell Suspension- MeJA control (2h)
  5: Cell Suspension- YE control (0h)   6: Cell Suspension- YE (24h)
  7: Cell Suspension- YE control (24h)   8: Cell Suspension- YE (2h)
  9: Cell Suspension- YE control (2h)   10: Flower
  11: Leaf   12: Leaf-2HA-1wk B5
  13: Leaf-2HA-1wk B5+NAA   14: Leaf-2HA-2wk B5+NAA+BAP
  15: Leaf-Jemalong-2wk B5+NAA+BAP   16: Nodule-10dpi (immature nodules)
  17: Nodule-14dpi (fixing nitrogen)   18: Nodule-16dpi (2d after NO3 treatment)
  19: Nodule-28dpi   20: Nodule-4dpi (bumps)
  21: Petiole   22: Pod
  23: Root   24: Root-0dpi (nodule control)
  25: Root (1cm adjacent from tip)   26: Root-0h (200mM NaCl) - control
  27: Root-10h (200mM NaCl)   28: Root-1h (200mM NaCl)
  29: Root-24h (200mM NaCl)   30: Root-2h (200mM NaCl)
  31: Root-5h (200mM NaCl)   32: Root (3mm tip)
  33: Split root: limited NH4   34: Split root: limited NO3
  35: Split root: no NO3   36: Split root: sufficient NH4
  37: Split root: sufficient NO3   38: Root-0h Phymatotrichum
  39: Root-72h Phymatotrichum   40: Root-96h Phymatotrichum
  41: Root-denodulated   42: Root-non-mycorrhizal
  43: Root-mycorrhizal   44: Split root (nodulating): limited N2
  45: Split root (nodulating): sufficient N2   46: Hairy Root-GUS (TT2 control)
  47: Hairy Root-TT2   48: Seed: 10dap-late embryogenesis (heart stage)
  49: Seed: 12dap-transition phase   50: Seed: 16dap-seed filling
  51: Seed: 20dap-seed filling   52: Seed: 24dap seed filling
  53: Seed: 36dap-physiological maturity   54: Seed coat (16-24dap)
  55: Transg. Seed: 20-22dap (empty vector control)   56: Transg. Seed: 20-22dap (mannan synthase)
  57: Shoot (split-root exp)-limited N2   58: Shoot (split-root exp)-limited NH4
  59: Shoot (split-root exp)-limited NO3   60: Shoot (split-root exp)-sufficient N2
  61: Shoot (split-root exp)-sufficient NH4   62: Shoot (split-root exp)-sufficient NO3
  63: Stem   64: Vegetative Bud
Search criteria: Fold change(s) A/B , or custom value: ,
in of the target experiments (slides), over the reference experiment (slide).
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